Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797661.1_cds_XP_016456227.1_4955
CDS Infomation

[gene=LOC107780202] [db_xref=GeneID:107780202] [protein=putative pentatricopeptide repeat-containing protein At5g52630] [protein_id=XP_016456227.1] [location=complement(join(16201..18378,18511..18603))] [gbkey=CDS]
Sequence

ATGGCTTTTCTGCCTTCAGTTATAGTAGGCAGCACCCTTAAGCTCGAACCTGATTTCAAG
AAACCTACACTCGCTTCTTTACCATTAGAAAAGAGAAATCATAGTCCTATGATTTTGGAT
AAAGCTTTGGACCCATTCAATCTTGACTTCAGAGAAGCACTTTCACTGATAAAAGAAGGT
GAAAAGAAAGTGGAATCAGCTGCTTATGTTCCACTATTACAAGAATGTATCAAGAATAAT
TCAGTTTCAGAAGCTGAAGCAATTCATGCCCACATAATCAAAATGGGTATCCATGAGGAC
TTGTTTCTCATGACATTCTTAGTTAATGTGTATGCGAAATGTGGGACTATGGATTGTGCA
CGTAAGGTTTTCGATAATTTGCCTAAAAGAAATGTTGTTACCTGGACATCCTTGATGTCT
GGCTATGTTCACAATGCACAGCCGGAGGTAGCTATTTCCGTGTTTCAGGAAATGTTGGAA
GTTGGTGGATTTCCCACGAATTATACGTTAGGTGTTGCATTCAAAGCTTGCTCTTTGTTG
GCTGATTTCGAGTTAGGAAAGCAGATTCATGGGTATGTGGTAAAATATGAAATTGAGGAT
GATACAAGTATTGGCAATGCTCTTTGTAGCTTGTATTGCAAAAGCGGTAATCTGGAATCT
GCTGTTAAAGCATTTCGGAGGATTTCTGATAAGAATGTGATCTCTTGGACAACTGCTATA
TCTGCCTGCGGAGATAATGGGGATTCTGCAATGGGATTAAGCCTTTTTGTTGAGATGCTT
TGCGCGAATGTGGAGGCTAATGAGTTCACATTGACAAGCGTAATGAGCATGTGTTGCATA
ATGCAGGCTCTAAAGATGGGATCACAAATTCATTCTTTGAGCATTAAACTAGGGTATGGT
TCTAATTTACGAGTAATGAATTCAATTATGTACTTATACTTGAAAAATGGATGGATTATA
GAGGCAAAAAAGCTGTTTGATGGAATGGAGACAATTAGTTTGGTTACATGGAATGCAATG
ATTGCAGGTCTAGCTCAAATGATGGATCTTGCCGAGGATGGTATCATCAATGCGCATTCC
AGTGGTATTGAGGCGCTGAACACTTTTCTGAGACTGCATCGATCAGGGATGAAGCCTGAT
TTATTCACCTTCTCAAGTGTGTTAACTGTATGTAGTAGTTTGGTTGCTTTGGAACAAGGG
GAGCAAATCCATGCTCAGGTTATTAAGTCCGGTTTTTTGTCTGATGTTGTAGTGGGAACT
GCCCTAGTTAACATGTATAGTAAATGTGGAAGCATTGACAGGGCAAGTAAAATTTTTGTG
GAGATGTCTACGCGAACTTTGATATCTTGGACATCTATGATTACTGCCTTCGCACAACAT
GGCTACTCTAAACAAGCATTACAGCTATTTGAGGATATGAGGTTCGTAGGAGCTAGACCA
AACAAGGTTACATTTGTGGGCGTGCTCTCCGCATGTAGCCATGCTGGACTGGTTGAAGAG
GCATTGGCATATTTTGACATGATGAAAAAAGAGTATAAAATTAAGCCCGTGATGGACCAT
TATGCATGCTTGATTGATATGTTTGTGAGGTTAGGTAGGATAGATGAAGCTTTTGACTTC
GTAAAGAAGATGGATTTTGAGCCTAATGAATTTATATGGTCACTTTTAATAGCGGGCTGT
AGAAGCCATGGGAAATCAGAGCTCGGCTTTTATGCTGCTGAACAACTACTAAACCTGAAT
CCGAAAAATTCAGAGGCTTACTTCTTGTTGTTAAACATGTACCTCTCAACGGAGAGATGG
AAGGATGTTTCCAAGGTGAGAAAGTTAATGAAAGATGAAAAAATTGGAAAGCTAAAGGAT
TGGAGCTGGATCAGCATCAGGGACAAAGTTCATTCATTTAGAACAGGTGATCGGTTGAAT
CCTCCATATGAAAATATAGACAATTTCTTAAGGGATTTGGATGACAAAGCAAGTACTATG
GGATTTGAGTTACAGACAACATTGGAGCTGCGAACTGAAGAAGATGATGAAGCAGCTTTT
CCTAGAGGTCGACACGGTGAGAAGTTGGCTGTTGCGTTTGGATTGCTGAGCACACCAAGT
GCTGCACCCATCCGAGTTATTAAGAGTATTAGCATGTGTAGAGATTGTCACAGCTTTATG
AAATTCATCTCACAGCTAACTTCAAGAAAAATCCTCATTAGAGATAGTAAAAGGCTGCAC
AAATTTGTAAATGGACATTGTTCTTGTGGTGATTTTGGTAGTCTTGTTTAA

Peptide Sequence

PEP ID

XP_016456227.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Nicotiana tabacum]
Sequence

MAFLPSVIVGSTLKLEPDFKKPTLASLPLEKRNHSPMILDKALDPFNLDFREALSLIKEG
EKKVESAAYVPLLQECIKNNSVSEAEAIHAHIIKMGIHEDLFLMTFLVNVYAKCGTMDCA
RKVFDNLPKRNVVTWTSLMSGYVHNAQPEVAISVFQEMLEVGGFPTNYTLGVAFKACSLL
ADFELGKQIHGYVVKYEIEDDTSIGNALCSLYCKSGNLESAVKAFRRISDKNVISWTTAI
SACGDNGDSAMGLSLFVEMLCANVEANEFTLTSVMSMCCIMQALKMGSQIHSLSIKLGYG
SNLRVMNSIMYLYLKNGWIIEAKKLFDGMETISLVTWNAMIAGLAQMMDLAEDGIINAHS
SGIEALNTFLRLHRSGMKPDLFTFSSVLTVCSSLVALEQGEQIHAQVIKSGFLSDVVVGT
ALVNMYSKCGSIDRASKIFVEMSTRTLISWTSMITAFAQHGYSKQALQLFEDMRFVGARP
NKVTFVGVLSACSHAGLVEEALAYFDMMKKEYKIKPVMDHYACLIDMFVRLGRIDEAFDF
VKKMDFEPNEFIWSLLIAGCRSHGKSELGFYAAEQLLNLNPKNSEAYFLLLNMYLSTERW
KDVSKVRKLMKDEKIGKLKDWSWISIRDKVHSFRTGDRLNPPYENIDNFLRDLDDKASTM
GFELQTTLELRTEEDDEAAFPRGRHGEKLAVAFGLLSTPSAAPIRVIKSISMCRDCHSFM
KFISQLTSRKILIRDSKRLHKFVNGHCSCGDFGSLV

Transcript Sequence

Gene sequence data has not been registered.